STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exoI2Staphylococcus nuclease (SNase-like). (249 aa)    
Predicted Functional Partners:
fkbM
Possible methyltransferase, FkbM family.
  
    0.613
rnpA
Probable ribonuclease p protein component (protein c5); RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.543
RPA4564
Phenylacetic acid degradation-related protein:Thioesterase superfamily.
  
    0.535
RPA1704
Probable transcriptional regulator, TetR family.
  
    0.527
RPA3266
Possible pyridine nucleotide-disulphide oxidored.
  
    0.518
RPA4196
TPR repeat.
 
    0.476
RPA4205
Possible polysaccharide export protein, PST family.
  
  
 0.473
RPA4486
Conserved hypothetical protein.
  
    0.465
RPA3349
Putative exopolysaccharide biosynthesis protein.
   
  
 0.420
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 
 0.416
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.