Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
exoI2Staphylococcus nuclease (SNase-like). (249 aa)    
Predicted Functional Partners:
fkbM
Possible methyltransferase, FkbM family.
  
     0.611
RPA3266
Possible pyridine nucleotide-disulphide oxidored.
  
    0.534
RPA4564
Phenylacetic acid degradation-related protein:Thioesterase superfamily.
       0.534
RPA1704
Probable transcriptional regulator, TetR family.
  
    0.523
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
   0.515
RPA4196
TPR repeat.
 
     0.472
RPA4486
Conserved hypothetical protein.
  
     0.464
RPA4205
Possible polysaccharide export protein, PST family.
  
  
 0.462
RPA3349
Putative exopolysaccharide biosynthesis protein.
   
  
 0.433
RPA0264
Possible O-antigen acetylase.
   
  
 0.420
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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