Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA4581Conserved hypothetical protein. (419 aa)    
Predicted Functional Partners:
RPA2750
Probable glycosyl transferase.
 
  
 0.921
RPA2752
Possible succinoglycan biosynthesis transport protein exoP.
 
  
 0.878
RPA4205
Possible polysaccharide export protein, PST family.
 
  
 0.868
RPA2751
Possible transferase.
 
  
 0.858
RPA2753
Conserved hypothetical protein.
 
   
 0.791
RPA4785
Polysaccharide deacetylase.
 
   
 0.790
RPA2754
Polysaccharide deacetylase.
 
   
 0.787
RPA1826
Conserved hypothetical protein; InterPro IPR006311:IPR006626.
 
     0.778
RPA4589
Possible membrane protein involved in export of O-antigen.
 
  
 0.778
RPA0880
Hypothetical protein; InterPro IPR000694.
 
     0.777
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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