STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA4584Possible endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (378 aa)    
Predicted Functional Partners:
bglA
Pseudogene of fused ABC transporter ATPase and permease domains; 4 probable transmembrane helices predicted byTMHMM2.0.
 
  
 0.944
RPA4585
Lipopolysaccharide biosynthesis.
 
   
 0.844
RPA4587
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.736
RPA4586
Possible Glycosyl transferases group 1.
 
   
 0.618
RPA2773
Epoxide hydrolase.
      
 0.543
RPA2852
Putative sugar hydrolase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
     
 0.427
RPA4583
Possible UDP-N-acetyl-D-mannosamine transferase; Belongs to the glycosyltransferase 26 family.
 
   
 0.425
cbbG
Glyceraldehyde-3-phosphate dehydrogenase(GAPDH); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
      
 0.421
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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