Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
RPA4585Lipopolysaccharide biosynthesis. (718 aa)    
Predicted Functional Partners:
RPA4833
Possible polysaccharide export protein.
 
 
 0.992
RPA2750
Probable glycosyl transferase.
 
  
 0.988
pssN
Putative capsule polysaccharide export outer membrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.969
RPA3357
Putative glycosyltransferase.
 
  
 0.911
RPA4584
Possible endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.844
manC,
Putative mannose-1-phosphate guanylyltransferase (GDP) (GDP-mannose pyrophosphorylase) (GMP); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.805
RPA3983
Putative nucleotide sugar epimerase/dehydratase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.795
RPA3359
O-antigen polymerase.
 
  
 0.786
RPA4589
Possible membrane protein involved in export of O-antigen.
 
  
 0.736
RPA0880
Hypothetical protein; InterPro IPR000694.
 
   
 0.706
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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