Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fixBElectron transfer flavoprotein alpha chain protein fixB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (368 aa)    
Predicted Functional Partners:
fixA
Electron trnasfer flavoprotein beta chain fixA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 0.999
etfB
Electron transfer flavoprotein beta chain, (ETFSS); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 0.998
fixX
Ferredoxin like protein, fixX; Could be a 3Fe-4S cluster-containing protein.
 
 0.997
fixC
Nitrogen fixation protein,fixC; Part of an electron transfer system. Belongs to the ETF-QO/FixC family.
 
 
 0.995
RPA1037
Possible electron transfer flavoprotein dehydrogenases; Accepts electrons from ETF and reduces ubiquinone.
 
 0.974
RPA2866
Pyruvate dehydrogenase E1 beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 
 0.871
RPA0818
Probable 3-hydroxyacyl-CoA dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.798
pimF
enoyl-CoA hydratase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.798
RPA2305
acyl-CoA dehydrogenase.
 
 0.763
RPA0740
Possible Acyl-CoA dehydrogenase.
 
 
 0.751
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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