Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4624Hypothetical protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (77 aa)    
Predicted Functional Partners:
RPA4626
Protein of unknown function from Deinococcus and Synechococcus; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.961
RPA4627
Conserved hypothetical protein; InterPro IPR001440 COGs COG0457.
 
    0.958
RPA4621
Conserved hypothetical protein.
 
    0.946
fixU,
Conserved hypothetical protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.936
nifB
Nitrogen fixation protein nifB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.911
hesB
Protein of unknown function, HesB/YadR/YfhF; Belongs to the HesB/IscA family.
 
    0.907
nifZ
NifZ domain.
 
  
0.902
ferN
Ferredoxin 2[4Fe-4S], fdxN.
 
    0.827
RPA4613
DUF683; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.784
RPA4622
Hypothetical protein.
  
    0.763
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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