Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nifAMo/Fe nitrogenase specific transcriptional regulator, NifA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (584 aa)    
Predicted Functional Partners:
vnfA
Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA.
  
 
0.923
anfA
Sigma-54 dependent, Iron nitrogenase transcriptional regulator, AnfA.
  
  
0.919
rpoN
RNA polymerase sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.850
nifB
Nitrogen fixation protein nifB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.834
nifW
Nitrogenase stabilizer NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
  
 0.828
fixL
Two component low oxygen sensor histidine kinase with PAS domains, fixL; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 
 0.824
RPA0981
Sensor histidine kinase with multiple PAS and a response regulator receiver domain.
   
 
 0.809
RPA1313
Sensor histidine kinase with multiple PAS/PAC domains.
 
 
 
 0.780
nifH4
Nitrogenase iron protein, nifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
  
  
 0.778
vnfH
Nitrogenase iron protein, vnfH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
  
  
 0.777
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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