Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RPA0356 | feoB | RPA0356 | RPA4635 | PTS system Hpr Kinase. | Ferrous iron transport protein B. | 0.564 |
| RPA4636 | feoB | RPA4636 | RPA4635 | FeoA family. | Ferrous iron transport protein B. | 0.981 |
| TolQ | atpC | RPA1117 | RPA0175 | TolQ protein, inner membrane protein, tolerance to group A colicins; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | Putative H+-transporting ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.734 |
| TolQ | exbD | RPA1117 | RPA3277 | TolQ protein, inner membrane protein, tolerance to group A colicins; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | Putative exbD, uptake of enterochelin; tonB-dependent uptake of B colicins. | 0.949 |
| TolQ | feoB | RPA1117 | RPA4635 | TolQ protein, inner membrane protein, tolerance to group A colicins; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | Ferrous iron transport protein B. | 0.571 |
| amtB2 | feoB | RPA0275 | RPA4635 | Putative ammonium transporter AmtB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Ferrous iron transport protein B. | 0.606 |
| atpC | TolQ | RPA0175 | RPA1117 | Putative H+-transporting ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. | TolQ protein, inner membrane protein, tolerance to group A colicins; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.734 |
| atpC | exbD | RPA0175 | RPA3277 | Putative H+-transporting ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. | Putative exbD, uptake of enterochelin; tonB-dependent uptake of B colicins. | 0.572 |
| atpC | feoB | RPA0175 | RPA4635 | Putative H+-transporting ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. | Ferrous iron transport protein B. | 0.604 |
| exbD | TolQ | RPA3277 | RPA1117 | Putative exbD, uptake of enterochelin; tonB-dependent uptake of B colicins. | TolQ protein, inner membrane protein, tolerance to group A colicins; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.949 |
| exbD | atpC | RPA3277 | RPA0175 | Putative exbD, uptake of enterochelin; tonB-dependent uptake of B colicins. | Putative H+-transporting ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.572 |
| exbD | feoB | RPA3277 | RPA4635 | Putative exbD, uptake of enterochelin; tonB-dependent uptake of B colicins. | Ferrous iron transport protein B. | 0.572 |
| exbD | fur-2 | RPA3277 | RPA0450 | Putative exbD, uptake of enterochelin; tonB-dependent uptake of B colicins. | Transcriptional regulator, FUR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the Fur family. | 0.523 |
| exbD | fur-4 | RPA3277 | RPA2339 | Putative exbD, uptake of enterochelin; tonB-dependent uptake of B colicins. | Transcriptional regulator, FUR family; possible iron response regulator IRR; Belongs to the Fur family. | 0.518 |
| feoB | RPA0356 | RPA4635 | RPA0356 | Ferrous iron transport protein B. | PTS system Hpr Kinase. | 0.564 |
| feoB | RPA4636 | RPA4635 | RPA4636 | Ferrous iron transport protein B. | FeoA family. | 0.981 |
| feoB | TolQ | RPA4635 | RPA1117 | Ferrous iron transport protein B. | TolQ protein, inner membrane protein, tolerance to group A colicins; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.571 |
| feoB | amtB2 | RPA4635 | RPA0275 | Ferrous iron transport protein B. | Putative ammonium transporter AmtB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.606 |
| feoB | atpC | RPA4635 | RPA0175 | Ferrous iron transport protein B. | Putative H+-transporting ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.604 |
| feoB | exbD | RPA4635 | RPA3277 | Ferrous iron transport protein B. | Putative exbD, uptake of enterochelin; tonB-dependent uptake of B colicins. | 0.572 |
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