Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4664CUPIN domain:transcriptional regulator, AraC family. (248 aa)    
Predicted Functional Partners:
RPA1910
Conserved hypothetical protein; InterPro IPR001687.
   
    0.550
RPA4165
Conserved hypothetical protein; COGs COG1853.
  
    0.550
RPA4663
Methyl-accepting chemotaxis receptor/sensory transducer; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
   0.541
RPA1988
Probable transcriptional regulator, AraC family.
 
 
 0.519
RPA2423
Probable transcriptional regulator, AraC family.
 
 
 0.458
RPA4280
Probable transcriptional regulator, AraC family.
  
     0.433
RPA2404
Probable transcriptional regulator, AraC family.
 
 
 0.422
RPA1058
Probable transcriptional regulator, AraC family.
  
     0.420
pchR
Putative transcriptional regulator PchR, AraC family.
  
     0.411
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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