Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
RPA4677Caspase-1, p20:TPR repeat. (476 aa)    
Predicted Functional Partners:
RPA4678
Possible outer membrane protein OprF (AF117972).
 
     0.635
RPA3916
TPR repeat.
  
    0.619
RPA4505
TPR repeat.
  
     0.567
RPA4682
Possible RND efflux membrane fusion protein precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.524
RPA4679
Possible component of multidrug efflux system.
 
     0.508
RPA4676
Probable transcriptional regulator, MarR family.
  
    0.465
RPA4680
Putative efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.450
RPA1796
Putative Adenylate/Guanylate cyclase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.431
RPA3684
TPR repeat.
 
     0.424
RPA3187
Sensor histidine kinase with a PAS/PAC domain.
  
   
 0.423
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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