Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4687Possible Glycosyl transferases. (683 aa)    
Predicted Functional Partners:
parA
Chromosome partitioning protein, ParA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.879
RPA3891
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.860
RPA4627
Conserved hypothetical protein; InterPro IPR001440 COGs COG0457.
 
 
 0.779
RPA1912
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg15.
 
  
 0.750
RPA0471
Putative creatine amidohydrolase.
  
  
 0.718
GTA-10
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg14.
 
   
 0.683
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
  
 
 0.650
RPA1855
Conserved hypothetical protein.
  
  
 0.647
GTA
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg6 (21% idenity).
 
  
 0.632
lysS
Lysyl tRNA synthetase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.629
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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