Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ligBProtocatechuate 4,5-dioxygenase, beta chain. (284 aa)    
Predicted Functional Partners:
ligA
Protocatechuate 4,5-dioxygenase, alpha chain.
 
 0.999
ligI
2-pyrone-4,6-dicarboxylic acid hydrolase.
 
  
 0.997
ligC
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.996
RPA1006
Possible protocatechuate 4,5-dioxygenase small subunit (AB035121); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.982
phbH
4-hydroxybenzoate hydroxylase (4-hydroxybenzoate-3-monooxygenase).
 
 
 0.966
vanB
Putative vanillate O-demethylase oxidoreductase.
  
  
 0.966
vanA
Putative vanillate O-demethylase oxygenase, iron-sulfur subunit.
 
  
 0.954
FldA
Conserved unknown protein; COGs COG2828.
 
  
 0.940
mhpB
Possible 2,3-dihydroxyphenylpropionate 1,2-dioxygenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 
0.908
FldZ
Possible acyl transferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   
 0.878
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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