Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
RPA4735Hypothetical protein; InterPro IPR000637. (258 aa)    
Predicted Functional Partners:
RPA4734
Conserved hypothetical protein; InterPro IPR000834 COGs COG1434.
       0.524
plsC
Putative 1-acyl-SN-glycerol-3-phosphate acyltransferase.
       0.511
ftsE
Putative cell division ATP-binding protein FtsE, ABC type transporter; Part of the ABC transporter FtsEX involved in cellular division.
       0.438
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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