STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaCPutative 4-carboxymuconolactone decarboxylase. (126 aa)    
Predicted Functional Partners:
pcaR
Putativetranscriptional regulator PcaR, IclR family.
 
  
 0.818
gctB
Putative CoA transferase, small subunit B.
 
  
 0.809
RPA3446
3-hydroxyisobutyrate dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the HIBADH-related family.
 
  
 0.758
gctA
Possible glutaconate CoA-transferase, subunit A.
  
  
 0.747
ligA
Protocatechuate 4,5-dioxygenase, alpha chain.
      
 0.723
ligB
Protocatechuate 4,5-dioxygenase, beta chain.
   
  
 0.723
ligI
2-pyrone-4,6-dicarboxylic acid hydrolase.
  
  
 0.720
phbH
4-hydroxybenzoate hydroxylase (4-hydroxybenzoate-3-monooxygenase).
 
  
 0.686
vanB
Putative vanillate O-demethylase oxidoreductase.
 
  
 0.678
RPA2149
Putative hydroxyquinol 1,2-dioxygenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.660
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.