Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4757Possible outer membrane receptor for iron transport. (738 aa)    
Predicted Functional Partners:
hupE
Putative membrane-bound hydrogenase component hupE.
 
    
 0.899
RPA4756
Helix-turn-helix protein, CopG family; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
 
   
 0.644
RPA1353
Conserved hypothetical protein; InterPro IPR000694.
 
 
 0.611
PA0781
Putative outer membrane hemin/siderophore receptor protein.
  
   
 0.568
exbB2
Putative transport protein ExbB2.
 
  
 0.515
RPA1349
Hemolysin activation/secretion protein.
  
   
 0.479
exbD2
Transport protein ExbD.
 
  
 0.478
RPA3338
Possible Condensation domain, peptide synthetase.
 
  
 0.474
fiu
Putative outer membrane receptor for iron transport; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.463
fecR4
Probable FecR, iron siderophore sensor protein.
 
  
 0.447
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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