Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4767Lipolytic enzyme, G-D-S-L family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (322 aa)    
Predicted Functional Partners:
opgC
Putative opgC protein.
 
     0.939
RPA4768
Conserved hypothetical protein.
 
    
0.899
RPA1105
Possible OpgC protein, require for succinylation of osmoregulated periplasmic glucans.
 
     0.645
RPA2536
Putative opgC protein.
 
     0.604
RPA4491
Conserved hypothetical protein; InterPro IPR001343 COGs COG3210.
 
 
 0.548
apaG
DUF525; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.529
RPA1146
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.505
RPA3431
Hypothetical protein.
  
    0.473
RPA3929
Conserved unknown protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
 
 0.455
RPA2457
Hypothetical protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.426
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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