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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4784OmpA/MotB domain; Observed by proteomics. (464 aa)    
Predicted Functional Partners:
RPA4783
Conserved hypothetical protein.
       0.865
RPA4678
Possible outer membrane protein OprF (AF117972).
  
     0.634
flgC
Flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.
   
 
 0.630
RPA4782
Conserved hypothetical protein; COGs COG0392.
       0.621
RPA1037
Possible electron transfer flavoprotein dehydrogenases; Accepts electrons from ETF and reduces ubiquinone.
  
  
 0.582
RPA4785
Polysaccharide deacetylase.
       0.571
RPA0136
Methyl-accepting chemotaxis receptor/sensory transducer; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   
 0.554
phoR
Two component sensor histidine kinase phoR.
     
 0.529
TolB
Tol-Pal system protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.515
RPA3176
Hypothetical protein; InterPro IPR002591.
  
     0.498
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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