Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4808Possible hexuronate transporter. (428 aa)    
Predicted Functional Partners:
RPA1079
Probable 4-methylmuconolactone Major Facilitator Family (MFS) transporter.
 
  
 0.628
RPA1389
Conserved hypothetical protein; InterPro IPR000276 COGs COG1840.
  
  
 0.543
RPA1476
Putative periplasmic solute-binding protein.
  
  
 0.543
fbpA
Periplasmic iron binding protein FbpA precursor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.543
RPA1741
Possible branched-chain amino acid transport system substrate-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.486
hpcH
Putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the HpcH/HpaI aldolase family.
  
 0.485
RPA2342
Putative transmembrane transport protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   
 0.467
RPA3338
Possible Condensation domain, peptide synthetase.
     
 0.462
RPA4809
Putative ABC transporter, ATP-binding protein.
  
  
 0.446
RPA2576
Conserved hypothetical protein; COGs COG3148.
  
     0.434
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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