Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA4818Conserved hypothetical protein. (112 aa)    
Predicted Functional Partners:
RPA4816
Two component sensor histidine kinase.
 
  
 0.974
RPA4817
Two-component transcriptional regulator, winged helix family.
 
  
 0.932
RPA0994
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.608
htpG
Heat shock protein HtpG; Molecular chaperone. Has ATPase activity.
       0.553
RPA4819
Hypothetical protein.
       0.543
feuQ
Two-component sensor histidine kinase, FeuQ.
 
  
 0.534
RPA2553
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.531
RPA4814
Conserved hypothetical protein.
 
     0.473
RPA1503
Hypothetical protein; InterPro IPR000379 COGs COG2267.
  
     0.422
ppsR2
Transcriptional regulator PpsR2; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.409
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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