Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4824Conserved hypothetical protein. (124 aa)    
Predicted Functional Partners:
RPA1762
Putative acyl-CoA dehydrogenase.
  
     0.585
RPA0547
Conserved hypothetical protein; InterPro IPR000379 COGs COG0400.
  
     0.574
RPA4825
Transcriptional regulator, MerR family.
     
 0.572
RPA4432
NHL repeat; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.492
RPA1576
Putative glutathione S-transferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.488
RPA1208
Putative dioxygenase.
  
   
 0.479
RPA1697
Competence-damaged protein; Belongs to the CinA family.
 
     0.459
RPA1756
Possible acetyl-CoA acetyltransferase.
  
     0.448
recQ
DNA helicase.
  
    0.438
RPA2067
Hypothetical protein.
  
     0.426
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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