Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA4830Metal dependent phosphohydrolase with a response regulator receiver domain. (370 aa)    
Predicted Functional Partners:
RPA0286
Putative diguanylate cyclase (GGDEF) with HAMP domain.
 
 
 0.791
RPA3170
Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS and GAF domains.
 
  
 0.785
RPA1657
Putative diguanylate cyclase (GGDEF).
 
 
 0.743
RPA3316
Possible chemotaxis cheB/cheR fusion protein.
   
 
 0.738
RPA3616
Putative diguanylate cyclase (GGDEF) with PAS/PAC domain.
 
 
 0.719
RPA2769
Putative diguanylate cyclase (GGDEF).
 
 
 0.713
RPA4565
Putative diguanylate cyclase (GGDEF).
 
 
 0.712
RPA0767
Putative diguanylate cyclase (GGDEF) with PAS/PAC domain.
 
 
 0.709
RPA2476
Putative diguanylate cyclase (GGDEF).
 
 
 0.707
RPA1642
Putative diguanylate cyclase (GGDEF).
 
 
 0.699
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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