STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900169305_00529Unannotated protein. (237 aa)    
Predicted Functional Partners:
nth
Unannotated protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
  
  
 0.916
GCA_900169305_00069
Unannotated protein.
 
  
 0.814
GCA_900169305_00531
Unannotated protein.
 
     0.783
GCA_900169305_00068
Unannotated protein.
  
   
 0.769
GCA_900169305_00534
Unannotated protein.
 
     0.710
asnS
Unannotated protein.
  
    0.705
GCA_900169305_00532
Unannotated protein.
 
  
 0.705
GCA_900169305_02176
Unannotated protein.
 
     0.639
rpoE
Unannotated protein; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
     0.626
GCA_900169305_00114
Unannotated protein.
  
     0.591
Your Current Organism:
Marinilactibacillus piezotolerans
NCBI taxonomy Id: 258723
Other names: DSM 16108, JCM 12337, M. piezotolerans, Marinilactibacillus piezotolerans Toffin et al. 2005, strain LT20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.