STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT9BtRNA methyltransferase 9B (putative). (450 aa)    
Predicted Functional Partners:
TRMT112
tRNA methyltransferase subunit 11-2.
   
 0.982
FAU
FAU ubiquitin like and ribosomal protein S30 fusion.
   
  0.828
METTL1
Methyltransferase like 1.
   
 0.818
TRMT6
tRNA methyltransferase 6.
   
 0.798
TRMT11
tRNA methyltransferase 11 homolog.
   
 0.791
ENSTMTP00000026179
annotation not available
   
 0.784
LOC112118525
RNA-binding protein NOB1.
   
 0.784
TSR1
TSR1 ribosome maturation factor.
   
  0.771
LSS
Lanosterol synthase.
   
 0.756
RPS2
Ribosomal protein S2.
    
 0.756
Your Current Organism:
Terrapene carolina
NCBI taxonomy Id: 2587831
Other names: T. carolina triunguis, Terrapene carolina triunguis, Terrapene mexicana triunguis, Terrapene triunguis, Three-toed box turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.