Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyc_0134 | Psyc_0223 | Psyc_0134 | Psyc_0223 | Glycerol-3-phosphate acyltransferase; Belongs to the GPAT/DAPAT family. | Diacylglycerol O-acyltransferase. | 0.418 |
Psyc_0134 | Psyc_0892 | Psyc_0134 | Psyc_0892 | Glycerol-3-phosphate acyltransferase; Belongs to the GPAT/DAPAT family. | Conserved hypothetical protein. | 0.710 |
Psyc_0134 | plsC | Psyc_0134 | Psyc_0356 | Glycerol-3-phosphate acyltransferase; Belongs to the GPAT/DAPAT family. | Lyso-ornithine lipid acyltransferase. | 0.664 |
Psyc_0223 | Psyc_0134 | Psyc_0223 | Psyc_0134 | Diacylglycerol O-acyltransferase. | Glycerol-3-phosphate acyltransferase; Belongs to the GPAT/DAPAT family. | 0.418 |
Psyc_0223 | Psyc_0892 | Psyc_0223 | Psyc_0892 | Diacylglycerol O-acyltransferase. | Conserved hypothetical protein. | 0.765 |
Psyc_0223 | Psyc_1562 | Psyc_0223 | Psyc_1562 | Diacylglycerol O-acyltransferase. | Hypothetical protein; Strong rbs. Predicted by glimmer, generation and critica. 4 transmembrane helices predicted. | 0.765 |
Psyc_0223 | plsC | Psyc_0223 | Psyc_0356 | Diacylglycerol O-acyltransferase. | Lyso-ornithine lipid acyltransferase. | 0.510 |
Psyc_0892 | Psyc_0134 | Psyc_0892 | Psyc_0134 | Conserved hypothetical protein. | Glycerol-3-phosphate acyltransferase; Belongs to the GPAT/DAPAT family. | 0.710 |
Psyc_0892 | Psyc_0223 | Psyc_0892 | Psyc_0223 | Conserved hypothetical protein. | Diacylglycerol O-acyltransferase. | 0.765 |
Psyc_0892 | Psyc_1562 | Psyc_0892 | Psyc_1562 | Conserved hypothetical protein. | Hypothetical protein; Strong rbs. Predicted by glimmer, generation and critica. 4 transmembrane helices predicted. | 0.720 |
Psyc_0892 | plsC | Psyc_0892 | Psyc_0356 | Conserved hypothetical protein. | Lyso-ornithine lipid acyltransferase. | 0.462 |
Psyc_1562 | Psyc_0223 | Psyc_1562 | Psyc_0223 | Hypothetical protein; Strong rbs. Predicted by glimmer, generation and critica. 4 transmembrane helices predicted. | Diacylglycerol O-acyltransferase. | 0.765 |
Psyc_1562 | Psyc_0892 | Psyc_1562 | Psyc_0892 | Hypothetical protein; Strong rbs. Predicted by glimmer, generation and critica. 4 transmembrane helices predicted. | Conserved hypothetical protein. | 0.720 |
Psyc_1562 | pilV | Psyc_1562 | Psyc_0234 | Hypothetical protein; Strong rbs. Predicted by glimmer, generation and critica. 4 transmembrane helices predicted. | Probable type IV fimbrial biogenesis protein PilV. | 0.681 |
Psyc_1562 | plsC | Psyc_1562 | Psyc_0356 | Hypothetical protein; Strong rbs. Predicted by glimmer, generation and critica. 4 transmembrane helices predicted. | Lyso-ornithine lipid acyltransferase. | 0.488 |
cdsA | plsC | Psyc_1532 | Psyc_0356 | Probable phosphatidate cytidylyltransferase; Belongs to the CDS family. | Lyso-ornithine lipid acyltransferase. | 0.531 |
pilV | Psyc_1562 | Psyc_0234 | Psyc_1562 | Probable type IV fimbrial biogenesis protein PilV. | Hypothetical protein; Strong rbs. Predicted by glimmer, generation and critica. 4 transmembrane helices predicted. | 0.681 |
pilV | plsC | Psyc_0234 | Psyc_0356 | Probable type IV fimbrial biogenesis protein PilV. | Lyso-ornithine lipid acyltransferase. | 0.423 |
plsC | Psyc_0134 | Psyc_0356 | Psyc_0134 | Lyso-ornithine lipid acyltransferase. | Glycerol-3-phosphate acyltransferase; Belongs to the GPAT/DAPAT family. | 0.664 |
plsC | Psyc_0223 | Psyc_0356 | Psyc_0223 | Lyso-ornithine lipid acyltransferase. | Diacylglycerol O-acyltransferase. | 0.510 |
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