STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyc_0462Prohead peptidase, Unknown type peptidase, MEROPS family U35. (248 aa)    
Predicted Functional Partners:
Psyc_0463
Probable phage portal protein.
 
   
 0.917
Psyc_0464
Probable phage terminase, large subunit; Often located next to the small subunit.
 
     0.844
Psyc_0465
Possible phage terminase, small subunit; Members tend to be adjacent to the phage terminase large subunit gene.
 
   
 0.838
Psyc_0461
Possible major phage capsid subunit precursor.
 
  
 0.779
Psyc_0466
Possible phage holin protein.
 
     0.678
Psyc_0459
Possible phage head-tail adaptor protein.
     
 0.443
Psyc_0460
Hypothetical protein.
     
 0.443
Psyc_0458
Conserved hypothetical protein; Part of a putative prophage.
       0.429
Your Current Organism:
Psychrobacter arcticus
NCBI taxonomy Id: 259536
Other names: P. arcticus 273-4, Psychrobacter arcticus 273-4, Psychrobacter arcticus str. 273-4, Psychrobacter arcticus strain 273-4, Psychrobacter sp. 273-4
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