STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyc_0906Hypothetical protein; Contains an ATP binding domain; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.998 at residue 22. (274 aa)    
Predicted Functional Partners:
Psyc_0175
Hypothetical protein.
 
   0.773
Psyc_0714
Hypothetical protein.
  
     0.755
Psyc_1945
Conserved hypothetical protein.
  
     0.755
Psyc_1807
Hypothetical protein; 3 transmembrane helices.
  
     0.749
Psyc_0119
Conserved hypothetical protein.
  
     0.746
Psyc_0832
Conserved hypothetical protein.
  
     0.733
Psyc_0947
Conserved hypothetical protein; Protein of unknown function DUF218 domain.
  
     0.732
Psyc_1405
Conserved hypothetical protein; LysM domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.994) with cleavage site probability 0.849 at residue 36.
  
    0.718
Psyc_1819
Hypothetical protein.
  
     0.718
Psyc_1509
Hypothetical protein; RBS found.
  
     0.716
Your Current Organism:
Psychrobacter arcticus
NCBI taxonomy Id: 259536
Other names: P. arcticus 273-4, Psychrobacter arcticus 273-4, Psychrobacter arcticus str. 273-4, Psychrobacter arcticus strain 273-4, Psychrobacter sp. 273-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.