STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyc_1299Probable fatty acyl-CoA reductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (295 aa)    
Predicted Functional Partners:
Psyc_0223
Diacylglycerol O-acyltransferase.
 
  
 0.776
Psyc_0301
Hypothetical protein; Esterase/lipase/thioesterase active site present.
  
   
 0.756
Psyc_0892
Conserved hypothetical protein.
  
   
 0.722
Psyc_1562
Hypothetical protein; Strong rbs. Predicted by glimmer, generation and critica. 4 transmembrane helices predicted.
  
     0.681
Psyc_1399
3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.599
Psyc_1308
Hypothetical protein; RBS found.
 
   
 0.578
Psyc_0129
Conserved hypothetical protein; RBS found.
  
   
 0.526
dusB
tRNA-U20-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.
 
     0.504
Psyc_1191
Probable alpha/beta hydrolase fold family esterase.
 
  
 0.469
Psyc_1915
Hypothetical protein; Lipolytic enzyme, G-D-S-L family, motif.
 
    0.445
Your Current Organism:
Psychrobacter arcticus
NCBI taxonomy Id: 259536
Other names: P. arcticus 273-4, Psychrobacter arcticus 273-4, Psychrobacter arcticus str. 273-4, Psychrobacter arcticus strain 273-4, Psychrobacter sp. 273-4
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