STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyc_1382Possible Serine/threonine phosphatase, family 2C. (285 aa)    
Predicted Functional Partners:
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
   
 0.840
Psyc_1381
Possible transcription factor; Contains p-loop ATP binding domain.
 
     0.833
Psyc_1192
Hypothetical protein; RBS found. One predicted transmembrane helix. Contains a predicted signal peptidase target sequence.
 
 
 0.793
Psyc_1819
Hypothetical protein.
  
     0.739
Psyc_1821
Putative signal transduction histidine kinase sensor; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.992) with cleavage site probability 0.729 at residue 28.
  
 
 0.729
Psyc_1406
Conserved hypothetical protein; Contains TPR repeat know to be involved in protein-protein interaction.
  
     0.724
tonB
Outer membrane transport energization protein TonB; TC 2.C.1.1.1.
  
     0.713
Psyc_1405
Conserved hypothetical protein; LysM domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.994) with cleavage site probability 0.849 at residue 36.
  
     0.706
Psyc_0227
Conserved hypothetical protein.
  
     0.683
ppkA
Putative Protein kinase:Serine/Threonine protein kinase.
 
 
 0.683
Your Current Organism:
Psychrobacter arcticus
NCBI taxonomy Id: 259536
Other names: P. arcticus 273-4, Psychrobacter arcticus 273-4, Psychrobacter arcticus str. 273-4, Psychrobacter arcticus strain 273-4, Psychrobacter sp. 273-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.