STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Psyc_1656Putative outer membrane protein/scaffolding protein MipA; Citation: J Biol Chem. 1999 Mar 5;274(10):6726-34; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.980 at residue 34. (270 aa)    
Predicted Functional Partners:
Psyc_0025
Conserved hypothetical protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
  
    0.642
Psyc_1405
Conserved hypothetical protein; LysM domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.994) with cleavage site probability 0.849 at residue 36.
  
     0.629
yjeG
Probable FxsA cytoplasmic membrane protein.
  
     0.618
Psyc_1655
Possible rhomboid family protein.
 
     0.600
Psyc_0539
Putative transposase OrfA, IS3/IS911family; Transposase.
  
     0.590
Psyc_0788
Hypothetical protein; 7 transmembrane helices.
  
     0.587
Psyc_0832
Conserved hypothetical protein.
  
     0.576
Psyc_1819
Hypothetical protein.
  
     0.576
Psyc_1406
Conserved hypothetical protein; Contains TPR repeat know to be involved in protein-protein interaction.
  
     0.560
Psyc_1821
Putative signal transduction histidine kinase sensor; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.992) with cleavage site probability 0.729 at residue 28.
 
     0.543
Your Current Organism:
Psychrobacter arcticus
NCBI taxonomy Id: 259536
Other names: P. arcticus 273-4, Psychrobacter arcticus 273-4, Psychrobacter arcticus str. 273-4, Psychrobacter arcticus strain 273-4, Psychrobacter sp. 273-4
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