STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyc_1908Conserved hypothetical protein; Protein of unknown function UPF0102; Belongs to the UPF0102 family. (173 aa)    
Predicted Functional Partners:
Psyc_2125
These proteins are a subset of the magnesium chelatase, ChlI subunit family, also called:hypothetical protein yifB and competence protein.
 
  
 0.673
rsmI
Probable Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.628
comF
Possible competence protein F.
 
    0.592
Psyc_1907
Conserved hypothetical protein; Transport-associated domain.
       0.562
dprA
Possible DNA processing protein.
 
  
 0.490
Psyc_1678
Diguanylate cyclase/phosphodiesterase.
   
    0.448
Psyc_1906
Conserved hypothetical protein; Esterase/lipase/thioesterase, active site.
       0.437
pfkB
Possible carbohydrate kinase, PfkB family.
       0.411
Your Current Organism:
Psychrobacter arcticus
NCBI taxonomy Id: 259536
Other names: P. arcticus 273-4, Psychrobacter arcticus 273-4, Psychrobacter arcticus str. 273-4, Psychrobacter arcticus strain 273-4, Psychrobacter sp. 273-4
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