STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mbur_1772tRNA-guanine transglycosylase; Evidence code ER3. (615 aa)    
Predicted Functional Partners:
Mbur_0057
Conserved archaeal protein with Radical SAM domain; Evidence code ER4.
 
     0.749
Mbur_0936
Hypothetical protein; Evidence code ER5.
 
   
 0.748
Mbur_0370
NMD3 family protein; Evidence code ER4.
  
     0.721
Mbur_1811
HTH DNA-binding domain protein; Evidence code ER4.
  
     0.715
Mbur_1374
Nucleic acid binding protein; Evidence code ER4.
  
     0.714
Mbur_1807
Protein of unknown function UPF0129; Evidence code ER4.
  
     0.700
Mbur_1895
Uncharacterised conserved Zn-finger protein UCP015877; Evidence code ER4.
  
     0.690
Mbur_1034
Hypothetical protein; Evidence code ER5.
  
     0.669
Mbur_1882
Protein of unknown function UPF0153; Evidence code ER4.
 
     0.658
Mbur_1362
Single-stranded DNA-binding protein; Evidence code ER3; Replication factor A; RP-A; RF-A.
  
     0.652
Your Current Organism:
Methanococcoides burtonii
NCBI taxonomy Id: 259564
Other names: M. burtonii DSM 6242, Methanococcoides burtonii DSM 6242, Methanococcoides burtonii str. DSM 6242
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.