STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSLysyl-tRNA synthetase; Evidence code ER2; Belongs to the class-I aminoacyl-tRNA synthetase family. (528 aa)    
Predicted Functional Partners:
Mbur_1864
Methyltransferase; Evidence code ER4.
       0.801
serS
Seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec); Belongs to the class-II aminoacyl-tRNA synthetase family. Type-2 seryl-tRNA synthetase subfamily.
 
  
 0.629
rpl26e
LSU ribosomal protein L26e; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.
  
    0.556
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
 
     0.498
Mbur_1806
Phosphoribosyltransferase; Evidence code ER3; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
 
     0.488
tyrS
Tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 3 subfamily.
   
  
 0.447
Mbur_1866
Hypothetical protein; Evidence code ER5.
       0.430
Mbur_0248
Peptidase M50 family protein; Evidence code ER4.
 
     0.429
Mbur_1867
Diaminopimelate decarboxylase; Evidence code ER3.
 
     0.421
Mbur_2340
Single-stranded DNA-specific exonuclease RecJ-like phosphoesterase; Evidence code ER3.
  
     0.413
Your Current Organism:
Methanococcoides burtonii
NCBI taxonomy Id: 259564
Other names: M. burtonii DSM 6242, Methanococcoides burtonii DSM 6242, Methanococcoides burtonii str. DSM 6242
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