STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mbur_1957Acetyltransferase (GNAT) family protein; Evidence code ER3. (139 aa)    
Predicted Functional Partners:
Mbur_1771
Acetyltransferase (GNAT) family protein; Evidence code ER3.
  
     0.689
rpl23p
LSU ribosomal protein L23P; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.
   
   0.594
Mbur_1956
Hypothetical protein; Evidence code ER5.
       0.586
rpl13p
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
   0.512
rpl37ae
LSU ribosomal protein L37Ae; Binds to the 23S rRNA.
  
 
 
 0.491
rpl18p
LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
   
   0.490
rpl29p
LSU ribosomal protein L29P; Evidence code ER2; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.483
rpl3p
LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
   0.482
rpl32e
LSU ribosomal protein L32E; Evidence code ER2; Belongs to the eukaryotic ribosomal protein eL32 family.
    
   0.476
rpl31e
LSU ribosomal protein L31E; Evidence code ER2; Belongs to the ribosomal protein L31e family.
  
   0.453
Your Current Organism:
Methanococcoides burtonii
NCBI taxonomy Id: 259564
Other names: M. burtonii DSM 6242, Methanococcoides burtonii DSM 6242, Methanococcoides burtonii str. DSM 6242
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.