STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW29778.1Putative signal transducing protein. (80 aa)    
Predicted Functional Partners:
SCW29769.1
Hypothetical protein.
 
     0.804
SCW76624.1
NlpC/P60 family protein.
 
     0.570
rsmI
16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.566
SCW29793.1
Dipeptidyl-peptidase-4.
       0.556
SCW29761.1
Hypothetical protein.
       0.547
SCW39575.1
GIY-YIG catalytic domain-containing protein.
  
  
 0.484
SCW80774.1
Hypothetical protein.
  
     0.429
slyX
SlyX protein; Belongs to the SlyX family.
  
   
 0.427
SCW63946.1
Hypothetical protein.
  
     0.423
Your Current Organism:
Asticcacaulis taihuensis
NCBI taxonomy Id: 260084
Other names: A. taihuensis, AS 1.3431, Asticcacaulis sp. T3-B7, Asticcacaulis taihuensis Liu et al. 2005, JCM 12463, strain T3-B7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.