STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW35721.1Type IV secretion system protein VirB4. (812 aa)    
Predicted Functional Partners:
SCW35752.1
Type IV secretion system protein VirB2.
 
 
 0.996
SCW35633.1
Type IV secretion system protein VirB10.
 
 
 0.994
SCW35653.1
Type IV secretion system protein VirB9.
 
 
 0.994
SCW35705.1
P-type conjugative transfer protein TrbJ.
 
  
 0.992
SCW35768.1
Type IV secretion system protein VirB11.
 
  
 0.990
SCW35686.1
Type IV secretion system protein TrbL.
 
  
 0.989
SCW35672.1
Type IV secretion system protein VirB5.
 
  
 0.987
SCW35737.1
Type IV secretion system protein VirB3.
 
  
 0.966
SCW77960.1
Type IV secretion system protein VirB3.
  
 
 0.959
SCW35798.1
Type IV secretion system protein VirD4.
 
  
 0.935
Your Current Organism:
Asticcacaulis taihuensis
NCBI taxonomy Id: 260084
Other names: A. taihuensis, AS 1.3431, Asticcacaulis sp. T3-B7, Asticcacaulis taihuensis Liu et al. 2005, JCM 12463, strain T3-B7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.