Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCW40306.1 | SCW57109.1 | SAMN02927928_0965 | SAMN02927928_1998 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Glutamate synthase (NADPH/NADH) large chain. | 0.550 |
SCW40306.1 | SCW57952.1 | SAMN02927928_0965 | SAMN02927928_2068 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | NADH dehydrogenase. | 0.467 |
SCW40306.1 | SCW60737.1 | SAMN02927928_0965 | SAMN02927928_2168 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Outer membrane protein. | 0.876 |
SCW40306.1 | SCW61159.1 | SAMN02927928_0965 | SAMN02927928_2203 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Polyphosphate kinase 2, PA0141 family. | 0.679 |
SCW40306.1 | SCW71577.1 | SAMN02927928_0965 | SAMN02927928_2850 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Serine/threonine protein phosphatase PrpC. | 0.471 |
SCW40306.1 | SCW74686.1 | SAMN02927928_0965 | SAMN02927928_3072 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Oxygen-independent coproporphyrinogen-3 oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.504 |
SCW40306.1 | SCW74954.1 | SAMN02927928_0965 | SAMN02927928_3101 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Putative membrane protein. | 0.901 |
SCW40306.1 | SCW74973.1 | SAMN02927928_0965 | SAMN02927928_3103 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.970 |
SCW40306.1 | SCW78704.1 | SAMN02927928_0965 | SAMN02927928_3411 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | PAS domain S-box-containing protein. | 0.527 |
SCW40306.1 | hemF | SAMN02927928_0965 | SAMN02927928_0966 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. | 0.963 |
SCW57109.1 | SCW40306.1 | SAMN02927928_1998 | SAMN02927928_0965 | Glutamate synthase (NADPH/NADH) large chain. | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.550 |
SCW57109.1 | SCW74686.1 | SAMN02927928_1998 | SAMN02927928_3072 | Glutamate synthase (NADPH/NADH) large chain. | Oxygen-independent coproporphyrinogen-3 oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.550 |
SCW57109.1 | SCW74973.1 | SAMN02927928_1998 | SAMN02927928_3103 | Glutamate synthase (NADPH/NADH) large chain. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.779 |
SCW57109.1 | SCW78704.1 | SAMN02927928_1998 | SAMN02927928_3411 | Glutamate synthase (NADPH/NADH) large chain. | PAS domain S-box-containing protein. | 0.630 |
SCW57952.1 | SCW40306.1 | SAMN02927928_2068 | SAMN02927928_0965 | NADH dehydrogenase. | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.467 |
SCW60737.1 | SCW40306.1 | SAMN02927928_2168 | SAMN02927928_0965 | Outer membrane protein. | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.876 |
SCW60737.1 | SCW61159.1 | SAMN02927928_2168 | SAMN02927928_2203 | Outer membrane protein. | Polyphosphate kinase 2, PA0141 family. | 0.681 |
SCW60737.1 | SCW74686.1 | SAMN02927928_2168 | SAMN02927928_3072 | Outer membrane protein. | Oxygen-independent coproporphyrinogen-3 oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.474 |
SCW61159.1 | SCW40306.1 | SAMN02927928_2203 | SAMN02927928_0965 | Polyphosphate kinase 2, PA0141 family. | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.679 |
SCW61159.1 | SCW60737.1 | SAMN02927928_2203 | SAMN02927928_2168 | Polyphosphate kinase 2, PA0141 family. | Outer membrane protein. | 0.681 |
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