STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW48365.1DNA-binding transcriptional regulator, FadR family. (264 aa)    
Predicted Functional Partners:
SCW43704.1
DNA-binding transcriptional regulator, GntR family.
  
    0.711
SCW60436.1
DNA-binding transcriptional regulator, GntR family.
  
    0.704
SCW48347.1
Hypothetical protein.
 
     0.639
SCW66328.1
DNA-binding transcriptional regulator, GntR family.
  
    0.540
SCW83567.1
Transcriptional regulator, IclR family.
  
    0.479
SCW78502.1
Transcriptional regulator, IclR family.
  
    0.455
SCW66780.1
Transcriptional regulator, IclR family.
  
    0.452
SCW48380.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
       0.441
SCW48395.1
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.426
Your Current Organism:
Asticcacaulis taihuensis
NCBI taxonomy Id: 260084
Other names: A. taihuensis, AS 1.3431, Asticcacaulis sp. T3-B7, Asticcacaulis taihuensis Liu et al. 2005, JCM 12463, strain T3-B7
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