STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW66568.1Circadian clock protein KaiC. (506 aa)    
Predicted Functional Partners:
SCW72544.1
PAS domain S-box-containing protein.
 
 
 
 0.890
SCW63125.1
PAS domain S-box-containing protein.
 
 
 
 0.886
SCW81822.1
Bacteriophytochrome (light-regulated signal transduction histidine kinase).
   
 
 0.881
SCW39595.1
His Kinase A (phospho-acceptor) domain-containing protein.
   
 
 0.870
SCW57063.1
His Kinase A (phospho-acceptor) domain-containing protein.
   
 
 0.870
SCW30942.1
His Kinase A (phospho-acceptor) domain-containing protein.
   
 
 0.858
SCW38434.1
GAF domain-containing protein.
  
 
   0.857
SCW72673.1
Signal transduction histidine kinase.
 
 
 
 0.855
SCW35202.1
Two-component system, OmpR family, sensor histidine kinase KdpD.
    
   0.819
SCW59960.1
His Kinase A (phospho-acceptor) domain-containing protein.
    
   0.819
Your Current Organism:
Asticcacaulis taihuensis
NCBI taxonomy Id: 260084
Other names: A. taihuensis, AS 1.3431, Asticcacaulis sp. T3-B7, Asticcacaulis taihuensis Liu et al. 2005, JCM 12463, strain T3-B7
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