STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW75974.1Iron complex outermembrane recepter protein. (777 aa)    
Predicted Functional Partners:
SCW42060.1
Protein TonB.
  
 
 0.788
SCW78368.1
Hypothetical protein.
  
 
 0.788
SCW60473.1
Outer membrane cobalamin receptor protein.
  
 
  0.740
SCW82728.1
Iron complex outermembrane recepter protein.
  
 
  0.733
SCW36161.1
FecR family protein.
 
  
 0.710
SCW79087.1
Iron complex outermembrane recepter protein.
  
   
 0.673
SCW40944.1
Iron complex outermembrane recepter protein.
  
 
  0.671
SCW61725.1
FecR family protein.
 
    0.663
SCW72225.1
FecR family protein.
 
    0.637
SCW81853.1
TonB-dependent Receptor Plug Domain.
  
 
  0.628
Your Current Organism:
Asticcacaulis taihuensis
NCBI taxonomy Id: 260084
Other names: A. taihuensis, AS 1.3431, Asticcacaulis sp. T3-B7, Asticcacaulis taihuensis Liu et al. 2005, JCM 12463, strain T3-B7
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