STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW82077.1TonB-dependent receptor. (940 aa)    
Predicted Functional Partners:
SCW40058.1
3-phytase.
 
     0.706
SCW60473.1
Outer membrane cobalamin receptor protein.
  
 
  0.690
SCW30625.1
Iron complex outermembrane recepter protein.
  
 
  0.601
SCW40944.1
Iron complex outermembrane recepter protein.
  
 
  0.582
SCW45402.1
Predicted methyltransferase.
  
     0.572
SCW81853.1
TonB-dependent Receptor Plug Domain.
  
 
  0.507
SCW38611.1
Zn-dependent amino-or carboxypeptidase, M28 family.
  
     0.504
SCW55813.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.502
SCW72225.1
FecR family protein.
  
    0.499
SCW43576.1
TonB-dependent Receptor Plug Domain.
  
 
  0.494
Your Current Organism:
Asticcacaulis taihuensis
NCBI taxonomy Id: 260084
Other names: A. taihuensis, AS 1.3431, Asticcacaulis sp. T3-B7, Asticcacaulis taihuensis Liu et al. 2005, JCM 12463, strain T3-B7
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