STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM56717.1Hypothetical protein. (784 aa)    
Predicted Functional Partners:
SFO32061.1
PAS domain S-box-containing protein.
   
 0.867
SFN01896.1
Hypothetical protein.
  
  
  0.759
SFM86484.1
PAS domain S-box-containing protein.
 
 
 0.750
SFN21565.1
Hypothetical protein.
  
     0.721
SFN10161.1
Hypothetical protein.
  
     0.719
SFM83101.1
Hypothetical protein.
  
     0.715
SFN42831.1
Hypothetical protein.
  
     0.713
SFM90002.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 0.704
SFM94511.1
Hypothetical protein.
  
    0.689
SFN17216.1
Hypothetical protein.
  
     0.686
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.