STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM55461.1phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein. (418 aa)    
Predicted Functional Partners:
SFM55498.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.998
SFM55519.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.998
SFM55541.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.997
SFO46180.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.989
SFO50519.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.986
SFO50502.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.984
SFO50532.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.982
SFM55482.1
Virulence factor Mce family protein.
 
 
0.968
SFM55391.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 
0.963
SFM55416.1
Virulence factor Mce family protein.
 
 
0.962
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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