STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM70729.1Short-chain dehydrogenase. (252 aa)    
Predicted Functional Partners:
SFO48559.1
Rifamycin polyketide synthase modules 1, 2 and 3.
   
 0.814
SFN16737.1
Decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
 
  
 0.792
SFN15919.1
decaprenylphospho-beta-D-ribofuranose 2-oxidase.
 
    0.779
SFN15687.1
Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose).
 
     0.766
SFO07434.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.710
SFM70746.1
Cystathionine beta-synthase.
       0.566
SFN16017.1
Arabinosyltransferase C.
 
   
 0.562
SFM77287.1
3-oxoacyl-[acyl-carrier-protein] synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
     
 0.551
SFN16327.1
Galactan 5-O-arabinofuranosyltransferase.
 
   
 0.547
SFM83281.1
Arabinosyltransferase C.
 
   
 0.525
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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