STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM83774.1Phage shock protein C (PspC) family protein. (66 aa)    
Predicted Functional Partners:
SFM75873.1
Phage shock protein A (PspA) family protein.
  
 
 0.992
SFM55682.1
Signal transduction histidine kinase.
  
 
 0.939
SFO32061.1
PAS domain S-box-containing protein.
  
 
 0.887
SFM56128.1
Putative membrane protein.
  
    0.793
SFO25184.1
PAS domain S-box-containing protein.
  
 
 0.766
SFM83797.1
Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
 
     0.616
SFM83819.1
GAF domain-containing protein.
       0.523
SFM83714.1
N-acetylglucosaminyl deacetylase, LmbE family.
 
     0.496
SFM90002.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
 0.492
SFM75068.1
Hypothetical protein.
  
  
 0.473
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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