STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM83887.1Transcriptional regulator, XRE family with cupin sensor. (194 aa)    
Predicted Functional Partners:
SFM83910.1
Thioredoxin reductase.
 
    0.815
SFM83934.1
Methyltransferase domain-containing protein.
 
   
 0.772
SFN30695.1
TIGR03083 family protein.
 
 
 0.717
SFN07091.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.632
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.572
SFN26352.1
Transcriptional regulator, XRE family with cupin sensor.
  
    0.527
SFN08346.1
Cupin domain-containing protein.
  
     0.472
SFM64786.1
NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains.
  
     0.427
SFO30548.1
NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains.
  
     0.409
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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