STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN13058.1Probable F420-dependent oxidoreductase, MSMEG_4141 family. (278 aa)    
Predicted Functional Partners:
SFN18241.1
Hypothetical protein.
   
    0.719
SFN86061.1
2-hydroxychromene-2-carboxylate isomerase.
   
    0.719
SFN83878.1
Thioredoxin; Belongs to the thioredoxin family.
   
    0.717
SFN13077.1
Osmoprotectant transport system ATP-binding protein.
  
    0.526
SFN13098.1
Osmoprotectant transport system permease protein.
       0.513
SFN13113.1
Osmoprotectant transport system permease protein.
       0.513
SFN13128.1
Osmoprotectant transport system substrate-binding protein.
       0.513
SFN13140.1
Hypothetical protein.
       0.513
SFN15957.1
Nitroreductase.
  
    0.486
SFN77163.1
ferredoxin--NADP+ reductase.
  
  
  0.464
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.