STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN30896.1Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (495 aa)    
Predicted Functional Partners:
SFN30876.1
Choline oxidase.
 
 
 0.976
SFN20441.1
Choline monooxygenase.
   
 
  0.914
SFN01714.1
Choline dehydrogenase.
 
 
 0.886
SFO48559.1
Rifamycin polyketide synthase modules 1, 2 and 3.
  
 0.882
SFO24442.1
Choline dehydrogenase.
 
 0.779
SFO36918.1
Choline dehydrogenase.
 
 
 0.778
SFO07434.1
Glutamate synthase (NADPH/NADH) large chain.
  
 
 0.716
SFN07392.1
Sarcosine/dimethylglycine N-methyltransferase.
     
 0.703
SFN98449.1
L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
0.699
SFM56675.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
   
 0.678
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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