STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN43871.1Transcriptional regulator, DeoR family. (316 aa)    
Predicted Functional Partners:
SFN43847.1
Threonine dehydrogenase.
 
   
 0.793
SFN43792.1
Homodimeric dihydroxyacetone kinase.
 
  
  0.782
SFN79013.1
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.711
SFN43817.1
Nitrate/nitrite transporter NarK.
 
     0.672
SFN64269.1
Homodimeric dihydroxyacetone kinase.
 
  
  0.655
gpsA
Glycerol 3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
  0.601
SFN62984.1
Dihydroxyacetone kinase/dihydroxyacetone kinase, C-terminal domain.
 
  
  0.587
SFN43765.1
Ribose 5-phosphate isomerase B.
 
   
 0.586
SFN63013.1
Dihydroxyacetone kinase/dihydroxyacetone kinase, N-terminal domain.
 
  
  0.558
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
 
   
 0.533
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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