STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN48531.1Sugar lactone lactonase YvrE. (297 aa)    
Predicted Functional Partners:
SFO36945.1
Predicted dehydrogenase.
 
 
  0.651
SFN86836.1
Predicted dehydrogenase.
  
 
  0.600
SFN48572.1
5,10-methylenetetrahydromethanopterin reductase.
 
     0.562
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
    
  0.554
SFM92799.1
Gluconokinase.
    
 0.554
ilvD-2
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
    
  0.554
edd
6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
    
  0.532
SFN45272.1
Predicted dehydrogenase.
 
 
  0.516
SFO13735.1
Predicted dehydrogenase.
 
 
  0.463
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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