STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN55289.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (253 aa)    
Predicted Functional Partners:
SFO48559.1
Rifamycin polyketide synthase modules 1, 2 and 3.
  
 0.924
SFN55311.1
Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
   0.809
SFN55347.1
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  0.809
SFN55327.1
enoyl-CoA hydratase.
   
   0.795
SFN98628.1
1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase.
  
0.754
SFO23222.1
Hypothetical protein; Belongs to the cytochrome P450 family.
  
 0.720
SFN94696.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
  
 
 0.671
SFN55373.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
   
   0.666
SFO07434.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.666
SFN55394.1
Sugar lactone lactonase YvrE.
  
 
  0.640
Your Current Organism:
Pseudonocardia ammonioxydans
NCBI taxonomy Id: 260086
Other names: CIP 109186, DSM 44958, JCM 12462, P. ammonioxydans, Pseudonocardia ammonioxydans Liu et al. 2006, Pseudonocardia sp. H9, strain H9
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